Difference between revisions of "PMID:17511876"

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{|  id="H4f31a2173ea6a"  class=" tableEdit PMID_info_table" 
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'''Lee, J, Jayaraman, A and Wood, TK'''  (2007) Indole is an inter-species biofilm signal mediated by SdiA.''BMC Microbiol.'' '''7''':42
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!align=left  |Abstract
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As a stationary phase signal, indole is secreted in large quantities into rich medium by Escherichia coli and has been shown to control several genes (e.g., astD, tnaB, gabT), multi-drug exporters, and the pathogenicity island of E. coli; however, its impact on biofilm formation has not been well-studied.
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17511876 PubMed]
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Online version:[http://dx.doi.org/10.1186/1471-2180-7-42 10.1186/1471-2180-7-42]
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!align=left  |Keywords
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4-Butyrolactone; Bacterial Proteins; Biofilms; Ecosystem; Escherichia coli; Gene Expression Profiling; Gene Expression Regulation, Bacterial; Genes, Bacterial; Indoles; Microbial Viability; Molecular Structure; Mutation; Oligonucleotide Array Sequence Analysis; Pseudomonas; Trans-Activators; Transcription, Genetic; Tryptophan
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==Main Points of the Paper ==
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{{LitSignificance}}
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== Materials and Methods Used ==
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{{LitMaterials}}
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==Phenotype Annotations==
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{|  id="P4f31a2175980d"  class=" tableEdit Phenotype_Table_2" 
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!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
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a mutation or genetic difference within a strain
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*Taxon: Escherichia coli
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*Strain: K-12
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*Substrain:
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*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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*Genotype of Reference Strain: ''trpE''
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*Genotype of Experimental Strain : ''trpE(del)''
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*Reference Condition:
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OMP:0000045
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increased motility
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ECO:0000094
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biological assay data
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Deletion mutation increase motility compared to wild-type strain, figure 6.
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a mutation or genetic difference within a strain
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*Taxon: Escherichia coli
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*Strain: K-12
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*Substrain: BW25113
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*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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*Genotype of Reference Strain: ''tnaC''
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*Genotype of Experimental Strain : ''tnaC(del)''
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*Reference Condition:
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OMP:0000045
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Increased motility
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ECO:0000094
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biological assay data
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Deletion mutation increase motility compared to wild-type strain, figure 6.
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==Notes==
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==References==
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{{RefHelp}}
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<references/>
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[[Category:Publication]]
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[[Category:Biofilms]]

Latest revision as of 18:45, 21 March 2012

Citation

Lee, J, Jayaraman, A and Wood, TK (2007) Indole is an inter-species biofilm signal mediated by SdiA.BMC Microbiol. 7:42

Abstract

As a stationary phase signal, indole is secreted in large quantities into rich medium by Escherichia coli and has been shown to control several genes (e.g., astD, tnaB, gabT), multi-drug exporters, and the pathogenicity island of E. coli; however, its impact on biofilm formation has not been well-studied.

Links

PubMed Online version:10.1186/1471-2180-7-42

Keywords

4-Butyrolactone; Bacterial Proteins; Biofilms; Ecosystem; Escherichia coli; Gene Expression Profiling; Gene Expression Regulation, Bacterial; Genes, Bacterial; Indoles; Microbial Viability; Molecular Structure; Mutation; Oligonucleotide Array Sequence Analysis; Pseudomonas; Trans-Activators; Transcription, Genetic; Tryptophan

edit table

Main Points of the Paper

Please summarize the main points of the paper.

Materials and Methods Used

Please list the materials and methods used in this paper (strains, plasmids, antibodies, etc).

Phenotype Annotations

See Help:AnnotationTable for details on how to edit this table.
<protect>

Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status

a mutation or genetic difference within a strain

  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: trpE
  • Genotype of Experimental Strain : trpE(del)
  • Reference Condition:

OMP:0000045

increased motility

ECO:0000094

biological assay data

Deletion mutation increase motility compared to wild-type strain, figure 6.

a mutation or genetic difference within a strain

  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: BW25113
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tnaC
  • Genotype of Experimental Strain : tnaC(del)
  • Reference Condition:

OMP:0000045

Increased motility

ECO:0000094

biological assay data

Deletion mutation increase motility compared to wild-type strain, figure 6.


edit table

</protect>

Notes

References

See Help:References for how to manage references in omp dev.

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