Difference between revisions of "PMID:16385049"
(Fill PMID: Page!) |
(Fill PMID: Page!) |
||
| Line 1: | Line 1: | ||
{{RightTOC}} | {{RightTOC}} | ||
| − | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542. | + | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542.Q564e41a1e3ba9--> |
<!-- | <!-- | ||
****************************************************************************************** | ****************************************************************************************** | ||
| Line 8: | Line 8: | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
| − | {| id=" | + | {| id="Q564e41a1e3ba9" class=" tableEdit PMID_info_table" |
|- | |- | ||
| Line 29: | Line 29: | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| − | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.542. | + | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.542.Q564e41a1e3ba9&page=542&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table]</div> || |
|} | |} | ||
<noinclude> | <noinclude> | ||
<!-- OMP category tags --> | <!-- OMP category tags --> | ||
</noinclude> | </noinclude> | ||
| − | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542. | + | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542.Q564e41a1e3ba9--> |
==Main Points of the Paper == | ==Main Points of the Paper == | ||
| Line 44: | Line 44: | ||
==Phenotype Annotations== | ==Phenotype Annotations== | ||
{{AnnotationTableHelp}} | {{AnnotationTableHelp}} | ||
| − | <protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.542. | + | <protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.542.U564e41a1f32a3--> |
<!-- | <!-- | ||
****************************************************************************************** | ****************************************************************************************** | ||
| Line 51: | Line 51: | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
| − | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id=" | + | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U564e41a1f32a3" class=" tableEdit Phenotype_Table_2" |
|- align='left' bgcolor='#CCCCFF' | |- align='left' bgcolor='#CCCCFF' | ||
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status | !|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| − | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.542. | + | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.542.U564e41a1f32a3&page=542&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</div> || || || || || || || || || |
|} | |} | ||
<noinclude> | <noinclude> | ||
<!-- OMP category tags --> | <!-- OMP category tags --> | ||
</noinclude> | </noinclude> | ||
| − | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542. | + | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.542.U564e41a1f32a3--></protect> |
==Notes== | ==Notes== | ||
Revision as of 16:39, 19 November 2015
| Citation |
Herzberg, M, Kaye, IK, Peti, W and Wood, TK (2006) YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. J. Bacteriol. 188:587-98 |
|---|---|
| Abstract |
YdgG is an uncharacterized protein that is induced in Escherichia coli biofilms. Here it is shown that deletion of ydgG decreased extracellular and increased intracellular concentrations of autoinducer 2 (AI-2); hence, YdgG enhances transport of AI-2. Consistent with this hypothesis, deletion of ydgG resulted in a 7,000-fold increase in biofilm thickness and 574-fold increase in biomass in flow cells. Also consistent with the hypothesis, deletion of ydgG increased cell motility by increasing transcription of flagellar genes (genes induced by AI-2). By expressing ydgG in trans, the wild-type phenotypes for extracellular AI-2 activity, motility, and biofilm formation were restored. YdgG is also predicted to be a membrane-spanning protein that is conserved in many bacteria, and it influences resistance to several antimicrobials, including crystal violet and streptomycin (this phenotype could also be complemented). Deletion of ydgG also caused 31% of the bacterial chromosome to be differentially expressed in biofilms, as expected, since AI-2 controls hundreds of genes. YdgG was found to negatively modulate expression of flagellum- and motility-related genes, as well as other known products essential for biofilm formation, including operons for type 1 fimbriae, autotransporter protein Ag43, curli production, colanic acid production, and production of polysaccharide adhesin. Eighty genes not previously related to biofilm formation were also identified, including those that encode transport proteins (yihN and yihP), polysialic acid production (gutM and gutQ), CP4-57 prophage functions (yfjR and alpA), methionine biosynthesis (metR), biotin and thiamine biosynthesis (bioF and thiDFH), anaerobic metabolism (focB, hyfACDR, ttdA, and fumB), and proteins with unknown function (ybfG, yceO, yjhQ, and yjbE); 10 of these genes were verified through mutation to decrease biofilm formation by 40% or more (yfjR, bioF, yccW, yjbE, yceO, ttdA, fumB, yjiP, gutQ, and yihR). Hence, it appears YdgG controls the transport of the quorum-sensing signal AI-2, and so we suggest the gene name tqsA. |
| Links |
PubMed PMC1347309 Online version:10.1128/JB.188.2.587-598.2006 |
| Keywords |
Biofilms/growth & development; Biological Transport/genetics; Escherichia coli K12/physiology; Escherichia coli Proteins/genetics; Escherichia coli Proteins/physiology; Gene Deletion; Genes, Bacterial/genetics; Homoserine/analogs & derivatives; Homoserine/metabolism; Lactones/metabolism; Transcription, Genetic |
Main Points of the Paper
Please summarize the main points of the paper.
Materials and Methods Used
Please list the materials and methods used in this paper (strains, plasmids, antibodies, etc).
Phenotype Annotations
See Help:AnnotationTable for details on how to edit this table.
<protect>
| Phenotype of | Taxon Information | Genotype Information (if known) | Condition Information | OMP ID | OMP Term Name | ECO ID | ECO Term Name | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|
</protect>
Notes
References
See Help:References for how to manage references in omp dev.
