PMID:14973046

Citation	Bausch, C, Ramsey, M and Conway, T (2004) Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli.J. Bacteriol. 186:1388-97
Abstract	The genetic organization of the idn genes that encode the pathway for L-idonate catabolism was characterized. The monocistronic idnK gene is transcribed divergently from the idnDOTR genes, which were shown to form an operon. The 215-bp regulatory region between the idnK and idnD genes contains promoters in opposite orientation with transcription start sites that mapped to positions -26 and -29 with respect to the start codons. The regulatory region also contains a single putative IdnR/GntR binding site centered between the two promoters, a CRP binding site upstream of idnD, and an UP element upstream of idnK. The genes of the L-idonate pathway were shown to be under catabolite repression control. Analysis of idnD- and idnK-lacZ fusions in a nonpolar idnD mutant that is unable to interconvert L-idonate and 5-ketogluconate indicated that either compound could induce the pathway. The L-idonate pathway was first characterized as a subsidiary pathway for D-gluconate catabolism (GntII), which is induced by D-gluconate in a GntI (primary gluconate system) mutant. Here we showed that the idnK and idnD operons are induced by D-gluconate in a GntI system mutant, presumably by endogenous formation of 5-ketogluconate from D-gluconate. Thus, the regulation of the GntII system is appropriate for this pathway, which is primarily involved in L-idonate catabolism; the GntII system can be induced by D-gluconate under conditions that block the GntI system.
Links	PubMed
Keywords	Electrophoresis, Gel, Two-Dimensional; Escherichia coli; Escherichia coli Proteins; Gene Expression Regulation, Bacterial; Oligonucleotide Array Sequence Analysis; Operon; Promoter Regions, Genetic; Sugar Acids; Transcription, Genetic
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Phenotype of	Taxon Information	Genotype Information (if known)	Condition Information	OMP ID	OMP Term Name	ECO ID	ECO Term Name	Notes	Status
a mutation or genetic difference within a strain	Taxon: Escherichia coli Strain: K-12 Substrain: NCBI Taxon ID: 83333	Genotype of Reference Strain: crp Genotype of Experimental Strain : crp(del)	Reference Condition:					Mutant unable to grow on MOPS minimal medium containing L-idonate, table 5.
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